Strabon

view scripts/runNoaRefinement.sh @ 1277:92b90ac06d39

[maven-release-plugin] prepare release v3.2.9
author Babis Nikolaou <charnik@di.uoa.gr>
date Sat Oct 19 23:37:23 2013 +0300 (2013-10-19)
parents b95784675cc7
children
line source
1 #! /bin/bash
3 #
4 # This Source Code Form is subject to the terms of the Mozilla Public
5 # License, v. 2.0. If a copy of the MPL was not distributed with this
6 # file, You can obtain one at http://mozilla.org/MPL/2.0/.
7 #
8 # Copyright (C) 2010, 2011, 2012, Pyravlos Team
9 #
10 # http://www.strabon.di.uoa.gr/
11 #
14 dataDir="/home/ggarbis/TELEIOS/NOA_Processing_Chain/chain_msg2/data/out_triples/"
15 dataUrl="http://pathway.di.uoa.gr/hotspots/out_triples/"
16 name="HMSG2_IR_039_s7_070825"
17 suffix=".hotspots.n3"
19 logFile="chain.log"
20 countTime="/usr/bin/time -ao ${logFile} -f %e"
21 echo > ${logFile}
23 deleteSeaHotspots="PREFIX noa: <http://teleios.di.uoa.gr/ontologies/noaOntology.owl#>
24 PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
25 PREFIX strdf: <http://strdf.di.uoa.gr/ontology#>
26 PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
28 DELETE {?h ?property ?object}
29 WHERE {
30 ?h rdf:type noa:Hotspot;
31 noa:hasAcquisitionTime \"TIMESTAMP\"^^xsd:dateTime;
32 noa:producedFromProcessingChain \"PROCESSING_CHAIN\"^^xsd:string;
33 noa:isDerivedFromSensor \"SENSOR\"^^xsd:string;
34 noa:hasGeometry ?hGeo;
35 ?property ?object .
36 OPTIONAL {
37 ?c rdf:type noa:Coastline;
38 noa:hasGeometry ?cGeo .
39 FILTER(strdf:mbbIntersects(?hGeo, ?cGeo)) .
40 }
41 FILTER(!bound(?c)) .
42 }"
44 refinePartialSeaHotspots="PREFIX noa: <http://teleios.di.uoa.gr/ontologies/noaOntology.owl#>
45 PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
46 PREFIX strdf: <http://strdf.di.uoa.gr/ontology#>
47 PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
49 DELETE { ?h noa:hasGeometry ?hGeo}
50 INSERT { ?h noa:hasGeometry ?dif}
51 WHERE {
52 SELECT DISTINCT ?h ?hGeo (strdf:intersection(?hGeo, strdf:union(?cGeo)) AS ?dif)
53 WHERE {
54 ?h rdf:type noa:Hotspot;
55 noa:hasAcquisitionTime ?hAcqTime;
56 noa:producedFromProcessingChain \"PROCESSING_CHAIN\"^^xsd:string;
57 noa:isDerivedFromSensor \"SENSOR\"^^xsd:string;
58 noa:hasGeometry ?hGeo .
59 FILTER(\"TIMESTAMP\"^^xsd:dateTime = ?hAcqTime) .
60 ?c rdf:type noa:Coastline;
61 noa:hasGeometry ?cGeo .
62 FILTER(strdf:mbbIntersects(?hGeo, ?cGeo)) .
63 }
64 GROUP BY ?h ?hGeo
65 HAVING strdf:overlap(?hGeo, strdf:union(?cGeo))
66 }"
68 refineTimePersistence="PREFIX noa: <http://teleios.di.uoa.gr/ontologies/noaOntology.owl#>
69 PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
70 PREFIX strdf: <http://strdf.di.uoa.gr/ontology#>
71 PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
73 INSERT {
74 ?newHotspot rdf:type noa:Hotspot .
75 ?newHotspot noa:hasConfidence ?hConfidence .
76 ?newHotspot noa:hasGeometry ?hGeometry1 .
77 ?newHotspot noa:hasAcquisitionTime \"TIMESTAMP\"^^xsd:dateTime .
78 ?newHotspot noa:isDerivedFromSensor \"SENSOR\"^^xsd:string .
79 ?newHotspot noa:hasConfirmation noa:unknown .
80 ?newHotspot noa:producedFromProcessingChain ?hProcessingChain .
81 ?newHotspot noa:isProducedBy noa:noa .
82 }
83 WHERE {
84 SELECT (BNODE() AS ?newHotspot)
85 (SUM(?hConfidence1)/ACQUISITIONS_IN_HALF_AN_HOUR AS ?hConfidence)
86 ?hGeometry1
87 (CONCAT(\"PROCESSING_CHAIN\"^^xsd:string,\"-TimePersistence\") AS ?hProcessingChain)
88 WHERE {
89 ?H1 rdf:type noa:Hotspot .
90 ?H1 noa:hasConfidence ?hConfidence1 .
91 ?H1 noa:hasGeometry ?hGeometry1 .
92 ?H1 noa:hasAcquisitionTime ?hAcquisitionTime1 .
93 ?H1 noa:isDerivedFromSensor \"SENSOR\"^^xsd:string .
94 ?H1 noa:hasConfirmation noa:unknown .
95 ?H1 noa:producedFromProcessingChain \"PROCESSING_CHAIN\"^^xsd:string .
96 ?H1 noa:isProducedBy noa:noa .
97 FILTER( \"MIN_ACQUISITION_TIME\"^^xsd:dateTime <= ?hAcquisitionTime1 && ?hAcquisitionTime1 < \"TIMESTAMP\"^^xsd:dateTime ) .
98 OPTIONAL {
99 ?H2 rdf:type noa:Hotspot .
100 ?H2 noa:hasGeometry ?HGEO2 .
101 ?H2 noa:hasAcquisitionTime ?hAcquisitionTime2 .
102 ?H2 noa:isDerivedFromSensor \"SENSOR\"^^xsd:string .
103 ?H2 noa:producedFromProcessingChain ?hProcessingChain2 .
104 FILTER(regex(\"PROCESSING_CHAIN\"^^xsd:string, ?hProcessingChain2)).
105 FILTER( strdf:equals(?hGeometry1, ?HGEO2) ) .
106 FILTER(?hAcquisitionTime2 = \"TIMESTAMP\"^^xsd:dateTime) .
107 }
108 FILTER( !BOUND(?H2) ) .
109 }
110 GROUP BY ?hGeometry1
111 HAVING(SUM(?hConfidence1)>0.0)
112 }
113 "
115 # Initialize
116 sudo service postgresql restart
117 dropdb endpoint
118 createdb endpoint -T template_postgis
119 sudo service tomcat6 restart
120 ./endpoint store http://localhost:8080/endpoint N-Triples -u http://pathway.di.uoa.gr/hotspots/grid_4.nt
122 #./scripts/endpoint query http://localhost:8080/endpoint "SELECT (COUNT(*) AS ?C) WHERE {?s ?p ?o}"
123 #echo "Continue?"
124 #read a
128 for h in `seq 0 12`; do
129 for m in `seq 0 15 45`; do
130 time=`printf "%02d%02d\n" $h $m`
131 time2=`printf "%02d:%02d\n" $h $m`
132 # file=${dataDir}${name}_${time}$suffix
133 file=${dataUrl}${name}_${time}$suffix
135 # store file
136 echo -n "storing 2007-08-25T${time2}:00 " >> ${logFile}
137 # ${countTime} ./strabon -db endpoint store $file
138 ${countTime} ./endpoint store http://localhost:8080/endpoint N-Triples -u ${file}
140 # echo "File ${file} stored!" >> ${logFile}
141 # echo "Continue?"
142 # read a
144 # deleteSeaHotspots
145 echo -n "deleteSeaHotspots 2007-08-25T${time2}:00 " >> ${logFile}
146 query=`echo "${deleteSeaHotspots}" | sed "s/TIMESTAMP/2007-08-25T${time2}:00/g" | \
147 sed "s/PROCESSING_CHAIN/DynamicThresholds/g" | \
148 sed "s/SENSOR/MSG2/g"`
149 # ${countTime} ./strabon -db endpoint update "${query}"
150 ${countTime} ./endpoint update http://localhost:8080/endpoint "${query}"
152 # echo "File ${file} deleteSeaHotspots done!"
153 # echo "Continue?"
154 # read a
156 # refinePartialSeaHotspots
157 echo -n "refinePartialSeaHotspots 2007-08-25T${time2}:00 " >> ${logFile}
158 query=`echo "${refinePartialSeaHotspots}" | sed "s/TIMESTAMP/2007-08-25T${time2}:00/g" | \
159 sed "s/PROCESSING_CHAIN/DynamicThresholds/g" | \
160 sed "s/SENSOR/MSG2/g"`
161 # ${countTime} ./strabon -db endpoint update "${query}"
162 ${countTime} ./endpoint update http://localhost:8080/endpoint "${query}"
164 # echo "File ${file} refinePartialSeaHotspots done!"
165 # echo "Continue?"
166 # read a
168 # refineTimePersistence
169 echo -n "refineTimePersistence 2007-08-25T${time2}:00 " >> ${logFile}
170 min_acquisition_time=`date --date="2007-08-25 ${time2}:00 EEST -30 minutes" +%Y-%m-%dT%H:%m:00`
171 query=`echo "${refineTimePersistence}" | sed "s/TIMESTAMP/2007-08-25T${time2}:00/g" | \
172 sed "s/PROCESSING_CHAIN/DynamicThresholds/g" | \
173 sed "s/SENSOR/MSG2/g" | \
174 sed "s/ACQUISITIONS_IN_HALF_AN_HOUR/3.0/g" | \
175 sed "s/MIN_ACQUISITION_TIME/${min_acquisition_time}/g"`
177 # echo "Query:"
178 # echo "${query}"
179 # echo "Continue?"
180 # read a
181 # ${countTime} ./strabon -db endpoint update "${query}"
182 # ${countTime} ./endpoint update http://localhost:8080/endpoint "${query}"
183 ${countTime} ./endpoint update http://localhost:8080/endpoint "${query}"
185 # echo "File ${file} refinePartialSeaHotspots done!"
186 # echo "Continue?"
187 # read a
188 done
189 done
192 #for f in `ls /home/ggarbis/TELEIOS/NOA_Processing_Chain/chain_msg2/data/out_triples/HMSG2_IR_039_s7_070825_*.hotspots.n3`
193 #do
195 # echo "Store $f"
196 # ${countTime} ./scripts/strabon -db endpoint store $f
197 #
198 #
199 #done